1: Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice

A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S,

Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J,

Phan Q, Chien M, Weir DB, Choksi R, De Vita G, Frezzetti D, Trompeter HI, Hornung

V, Teng G, Hartmann G, Palkovits M, Di Lauro R, Wernet P, Macino G, Rogler CE,

Nagle JW, Ju J, Papavasiliou FN, Benzing T, Lichter P, Tam W, Brownstein MJ,

Bosio A, Borkhardt A, Russo JJ, Sander C, Zavolan M, Tuschl T.

 A mammalian microRNA expression atlas based on small RNA library sequencing.

Cell. 2007 Jun 29;129(7):1401-14.

2: Franchi L, Macino G.

 In vitro phosphorylation and kinase assays in Neurospora crassa.

Methods Mol Biol. 2007;362:407-12.

3: Fulci V, Macino G.

 Quelling: post-transcriptional gene silencing guided by small RNAs in Neurospora

crassa.

Curr Opin Microbiol. 2007 Apr;10(2):199-203. Epub 2007 Mar 28.

4: Fulci V, Chiaretti S, Goldoni M, Azzalin G, Carucci N, Tavolaro S, Castellano

L, Magrelli A, Citarella F, Messina M, Maggio R, Peragine N, Santangelo S, Mauro

FR, Landgraf P, Tuschl T, Weir DB, Chien M, Russo JJ, Ju J, Sheridan R, Sander C,

Zavolan M, Guarini A, Foa R, Macino G.

 Quantitative technologies establish a novel microRNA profile of chronic

lymphocytic leukemia.

Blood. 2007 Jun 1;109(11):4944-51. Epub 2007 Feb 27.

5: Sood P, Krek A, Zavolan M, Macino G, Rajewsky N.

 Cell-type-specific signatures of microRNAs on target mRNA expression.

Proc Natl Acad Sci U S A. 2006 Feb 21;103(8):2746-51. Epub 2006 Feb 13.

6: Chicas A, Forrest EC, Sepich S, Cogoni C, Macino G.

 Small interfering RNAs that trigger posttranscriptional gene silencing are not

required for the histone H3 Lys9 methylation necessary for transgenic tandem

repeat stabilization in Neurospora crassa.

Mol Cell Biol. 2005 May;25(9):3793-801.

7: Franchi L, Fulci V, Macino G.

 Protein kinase C modulates light responses in Neurospora by regulating the blue

light photoreceptor WC-1.

Mol Microbiol. 2005 Apr;56(2):334-45.

8: Nolan T, Braccini L, Azzalin G, De Toni A, Macino G, Cogoni C.

 The post-transcriptional gene silencing machinery functions independently of DNA

methylation to repress a LINE1-like retrotransposon in Neurospora crassa.

Nucleic Acids Res. 2005 Mar 14;33(5):1564-73. Print 2005.

9: Goldoni M, Azzalin G, Macino G, Cogoni C.

 Efficient gene silencing by expression of double stranded RNA in Neurospora

crassa.

Fungal Genet Biol. 2004 Nov;41(11):1016-24.

10: Chicas A, Cogoni C, Macino G.

 RNAi-dependent and RNAi-independent mechanisms contribute to the silencing of

RIPed sequences in Neurospora crassa.

Nucleic Acids Res. 2004 Aug 9;32(14):4237-43. Print 2004.

11: Ambra R, Grimaldi B, Zamboni S, Filetici P, Macino G, Ballario P.

 Photomorphogenesis in the hypogeous fungus Tuber borchii: isolation and

characterization of Tbwc-1, the homologue of the blue-light photoreceptor of

Neurospora crassa.

Fungal Genet Biol. 2004 Jul;41(7):688-97.

12: Forrest EC, Cogoni C, Macino G.

 The RNA-dependent RNA polymerase, QDE-1, is a rate-limiting factor in

post-transcriptional gene silencing in Neurospora crassa.

Nucleic Acids Res. 2004 Apr 16;32(7):2123-8. Print 2004.

13: Catalanotto C, Pallotta M, ReFalo P, Sachs MS, Vayssie L, Macino G, Cogoni C.

 Redundancy of the two dicer genes in transgene-induced posttranscriptional gene

silencing in Neurospora crassa.

Mol Cell Biol. 2004 Mar;24(6):2536-45.

14: Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, FitzHugh W,

Ma LJ, Smirnov S, Purcell S, Rehman B, Elkins T, Engels R, Wang S, Nielsen CB,

Butler J, Endrizzi M, Qui D, Ianakiev P, Bell-Pedersen D, Nelson MA,

Werner-Washburne M, Selitrennikoff CP, Kinsey JA, Braun EL, Zelter A, Schulte U,

Kothe GO, Jedd G, Mewes W, Staben C, Marcotte E, Greenberg D, Roy A, Foley K,

Naylor J, Stange-Thomann N, Barrett R, Gnerre S, Kamal M, Kamvysselis M, Mauceli

E, Bielke C, Rudd S, Frishman D, Krystofova S, Rasmussen C, Metzenberg RL,

Perkins DD, Kroken S, Cogoni C, Macino G, Catcheside D, Li W, Pratt RJ, Osmani

SA, DeSouza CP, Glass L, Orbach MJ, Berglund JA, Voelker R, Yarden O, Plamann M,

Seiler S, Dunlap J, Radford A, Aramayo R, Natvig DO, Alex LA, Mannhaupt G, Ebbole

DJ, Freitag M, Paulsen I, Sachs MS, Lander ES, Nusbaum C, Birren B.

 The genome sequence of the filamentous fungus Neurospora crassa.

Nature. 2003 Apr 24;422(6934):859-68.

15: Pickford A, Braccini L, Macino G, Cogoni C.

 The QDE-3 homologue RecQ-2 co-operates with QDE-3 in DNA repair in Neurospora

crassa.

Curr Genet. 2003 Jan;42(4):220-7. Epub 2002 Dec 10.

16: Catalanotto C, Azzalin G, Macino G, Cogoni C.

 Involvement of small RNAs and role of the qde genes in the gene silencing pathway

in Neurospora.

Genes Dev. 2002 Apr 1;16(7):790-5.

17: Pickford AS, Catalanotto C, Cogoni C, Macino G.

 Quelling in Neurospora crassa.

Adv Genet. 2002;46:277-303. Review. No abstract available.

18: Chicas A, Macino G.

 Characteristics of post-transcriptional gene silencing.

EMBO Rep. 2001 Nov;2(11):992-6. Review.

19: Merrow M, Roenneberg T, Macino G, Franchi L.

 A fungus among us: the Neurospora crassa circadian system.

Semin Cell Dev Biol. 2001 Aug;12(4):279-85. Review.

20: Merrow M, Franchi L, Dragovic Z, Gorl M, Johnson J, Brunner M, Macino G,

Roenneberg T.

 Circadian regulation of the light input pathway in Neurospora crassa.

EMBO J. 2001 Feb 1;20(3):307-15.

21: Cogoni C, Macino G.

 Post-transcriptional gene silencing across kingdoms.

Curr Opin Genet Dev. 2000 Dec;10(6):638-43. Review.

22: Handa N, Noguchi Y, Sakuraba Y, Ballario P, Macino G, Fujimoto N, Ishii C,

Inoue H.

 Characterization of the Neurospora crassa mus-25 mutant: the gene encodes a

protein which is homologous to the Saccharomyces cerevisiae Rad54 protein.

Mol Gen Genet. 2000 Sep;264(1-2):154-63.

23: Ambra R, Macino G.

 Cloning and characterization of PKC-homologous genes in the truffle species Tuber

borchii and Tuber magnatum.

FEMS Microbiol Lett. 2000 Aug 1;189(1):45-53.

24: Zordan M, Costa R, Macino G, Fukuhara C, Tosini G.

 Circadian clocks: what makes them tick?

Chronobiol Int. 2000 Jul;17(4):433-51. Review.

25: Catalanotto C, Azzalin G, Macino G, Cogoni C.

 Gene silencing in worms and fungi.

Nature. 2000 Mar 16;404(6775):245. No abstract available.

26: Cogoni C, Macino G.

 Homology-dependent gene silencing in plants and fungi: a number of variations on

the same theme.

Curr Opin Microbiol. 1999 Dec;2(6):657-62. Review.

27: Cogoni C, Macino G.

 Posttranscriptional gene silencing in Neurospora by a RecQ DNA helicase.

Science. 1999 Dec 17;286(5448):2342-4.

28: Arpaia G, Cerri F, Baima S, Macino G.

 Involvement of protein kinase C in the response of Neurospora crassa to blue

light.

Mol Gen Genet. 1999 Sep;262(2):314-22.

29: Linden H, Ballario P, Arpaia G, Macino G.

 Seeing the light: news in Neurospora blue light signal transduction.

Adv Genet. 1999;41:35-54. Review. No abstract available.

30: Talora C, Franchi L, Linden H, Ballario P, Macino G.

 Role of a white collar-1-white collar-2 complex in blue-light signal

transduction.

EMBO J. 1999 Sep 15;18(18):4961-8.

31: Cogoni C, Macino G.

 Gene silencing in Neurospora crassa requires a protein homologous to

RNA-dependent RNA polymerase.

Nature. 1999 May 13;399(6732):166-9.

32: De Bellis R, Agostini D, Piccoli G, Vallorani L, Potenza L, Polidori E, Sisti

D, Amoresano A, Pucci P, Arpaia G, Macino G, Balestrini R, Bonfante P, Stocchi V.

 The tbf-1 gene from the white truffle Tuber borchii codes for a structural cell

wall protein specifically expressed in fruitbody.

Fungal Genet Biol. 1998 Nov;25(2):87-99.

33: Ballario P, Talora C, Galli D, Linden H, Macino G.

 Roles in dimerization and blue light photoresponse of the PAS and LOV domains of

Neurospora crassa white collar proteins.

Mol Microbiol. 1998 Aug;29(3):719-29.

34: Linden H, Ballario P, Macino G.

 Blue light regulation in Neurospora crassa.

Fungal Genet Biol. 1997 Dec;22(3):141-50. Review.

35: Quondam M, Barbato C, Pickford A, Helmer-Citterich M, Macino G.

 Homology modeling of Neurospora crassa geranylgeranyl pyrophosphate synthase:

structural interpretation of mutant phenotypes.

Protein Eng. 1997 Sep;10(9):1047-55.

36: Ballario P, Macino G.

 White collar proteins: PASsing the light signal in Neurospora crassa.

Trends Microbiol. 1997 Nov;5(11):458-62. Review.

37: Cogoni C, Macino G.

 Isolation of quelling-defective (qde) mutants impaired in posttranscriptional

transgene-induced gene silencing in Neurospora crassa.

Proc Natl Acad Sci U S A. 1997 Sep 16;94(19):10233-8.

38: Linden H, Rodriguez-Franco M, Macino G.

 Mutants of Neurospora crassa defective in regulation of blue light perception.

Mol Gen Genet. 1997 Mar 26;254(2):111-8.

39: Linden H, Macino G.

 White collar 2, a partner in blue-light signal transduction, controlling

expression of light-regulated genes in Neurospora crassa.

EMBO J. 1997 Jan 2;16(1):98-109.

40: Barbato C, Calissano M, Pickford A, Romano N, Sandmann G, Macino G.

 Mild RIP-an alternative method for in vivo mutagenesis of the albino-3 gene in

Neurospora crassa.

Mol Gen Genet. 1996 Sep 25;252(4):353-61.

41: Homann V, Mende K, Arntz C, Ilardi V, Macino G, Morelli G, Bose G, Tudzynski

B.

 The isoprenoid pathway: cloning and characterization of fungal FPPS genes.

Curr Genet. 1996 Aug;30(3):232-9.

42: Cogoni C, Irelan JT, Schumacher M, Schmidhauser TJ, Selker EU, Macino G.

 Transgene silencing of the al-1 gene in vegetative cells of Neurospora is

mediated by a cytoplasmic effector and does not depend on DNA-DNA interactions or

DNA methylation.

EMBO J. 1996 Jun 17;15(12):3153-63.

43: Ballario P, Vittorioso P, Magrelli A, Talora C, Cabibbo A, Macino G.

 White collar-1, a central regulator of blue light responses in Neurospora, is a

zinc finger protein.

EMBO J. 1996 Apr 1;15(7):1650-7.

44: Arpaia G, Carattoli A, Macino G.

 Light and development regulate the expression of the albino-3 gene in Neurospora

crassa.

Dev Biol. 1995 Aug;170(2):626-35.

45: Carattoli A, Kato E, Rodriguez-Franco M, Stuart WD, Macino G.

 A chimeric light-regulated amino acid transport system allows the isolation of

blue light regulator (blr) mutants of Neurospora crassa.

Proc Natl Acad Sci U S A. 1995 Jul 3;92(14):6612-6.

46: Arpaia G, Loros JJ, Dunlap JC, Morelli G, Macino G.

 Light induction of the clock-controlled gene ccg-1 is not transduced through the

circadian clock in Neurospora crassa.

Mol Gen Genet. 1995 Apr 20;247(2):157-63.

47: Cogoni C, Valenzuela L, Gonzalez-Halphen D, Olivera H, Macino G, Ballario P,

Gonzalez A.

 Saccharomyces cerevisiae has a single glutamate synthase gene coding for a

plant-like high-molecular-weight polypeptide.

J Bacteriol. 1995 Feb;177(3):792-8.

48: Vittorioso P, Carattoli A, Londei P, Macino G.

 Internal translational initiation in the mRNA from the Neurospora crassa albino-3

gene.

J Biol Chem. 1994 Oct 28;269(43):26650-4.

49: Carattoli A, Cogoni C, Morelli G, Macino G.

 Molecular characterization of upstream regulatory sequences controlling the

photoinduced expression of the albino-3 gene of Neurospora crassa.

Mol Microbiol. 1994 Sep;13(5):787-95.

50: Cogoni C, Romano N, Macino G.

 Suppression of gene expression by homologous transgenes.

Antonie Van Leeuwenhoek. 1994;65(3):205-9. Review.

51: Arpaia G, Loros JJ, Dunlap JC, Morelli G, Macino G.

 The interplay of light and the circadian clock. Independent dual regulation of

clock-controlled gene ccg-2(eas).

Plant Physiol. 1993 Aug;102(4):1299-305.

52: Sandmann G, Misawa N, Wiedemann M, Vittorioso P, Carattoli A, Morelli G,

Macino G.

 Functional identification of al-3 from Neurospora crassa as the gene for

geranylgeranyl pyrophosphate synthase by complementation with crt genes, in vitro

characterization of the gene product and mutant analysis.

J Photochem Photobiol B. 1993 May;18(2-3):245-51.

53: Morelli G, Nelson MA, Ballario P, Macino G.

 Photoregulated carotenoid biosynthetic genes of Neurospora crassa.

Methods Enzymol. 1993;214:412-24. No abstract available.

54: Romano N, Macino G.

 Quelling: transient inactivation of gene expression in Neurospora crassa by

transformation with homologous sequences.

Mol Microbiol. 1992 Nov;6(22):3343-53.

55: Baima S, Carattoli A, Macino G, Morelli G.

 Photoinduction of albino-3 gene expression in Neurospora crassa conidia.

J Photochem Photobiol B. 1992 Aug 31;15(3):233-8.

56: Gonzalez A, Membrillo-Hernandez J, Olivera H, Aranda C, Macino G, Ballario P.

 Cloning of a yeast gene coding for the glutamate synthase small subunit (GUS2) by

complementation of Saccharomyces cerevisiae and Escherichia coli glutamate

auxotrophs.

Mol Microbiol. 1992 Feb;6(3):301-8.

57: Baima S, Macino G, Morelli G.

 Photoregulation of the albino-3 gene in Neurospora crassa.

J Photochem Photobiol B. 1991 Nov;11(2):107-15.

58: Carattoli A, Romano N, Ballario P, Morelli G, Macino G.

 The Neurospora crassa carotenoid biosynthetic gene (albino 3) reveals highly

conserved regions among prenyltransferases.

J Biol Chem. 1991 Mar 25;266(9):5854-9.

59: Nelson MA, Morelli G, Carattoli A, Romano N, Macino G.

 Molecular cloning of a Neurospora crassa carotenoid biosynthetic gene (albino-3)

regulated by blue light and the products of the white collar genes.

Mol Cell Biol. 1989 Mar;9(3):1271-6.

60: Nelson MA, Macino G.

 Structure and expression of the overlapping ND4L and ND5 genes of Neurospora

crassa mitochondria.

Mol Gen Genet. 1987 Feb;206(2):307-17.

61: Nelson MA, Macino G.

 Three class I introns in the ND4L/ND5 transcriptional unit of Neurospora crassa

mitochondria.

Mol Gen Genet. 1987 Feb;206(2):318-25.

62: Pagnani M, Negrini M, Reschiglian P, Corallini A, Balboni PG, Scherneck S,

Macino G, Milanesi G, Barbanti-Brodano G.

 Molecular and biological properties of BK virus-IR, a BK virus variant isolated

from a human tumor.

J Virol. 1986 Aug;59(2):500-5.

63: Burger G, Helmer Citterich M, Nelson MA, Werner S, Macino G.

 RNA processing in Neurospora crassa mitochondria: transfer RNAs punctuate a large

precursor transcript.

EMBO J. 1985 Jan;4(1):197-204.

64: Morelli G, Macino G.

 Two intervening sequences in the ATPase subunit 6 gene of Neurospora crassa. A

short intron (93 base-pairs) and a long intron that is stable after excision.

J Mol Biol. 1984 Sep 25;178(3):491-507.

65: Thalenfeld BE, Bonitz SG, Nobrega FG, Macino G, Tzagoloff A.

 oli1 Transcripts in wild type and in a cytoplasmic "petite" mutant of yeast.

J Biol Chem. 1983 Dec 10;258(23):14065-8.

66: Macino G, Morelli G.

 Cytochrome oxidase subunit 2 gene in Neurospora crassa mitochondria.

J Biol Chem. 1983 Nov 10;258(21):13230-5.

67: Helmer-Citterich M, Morelli G, Macino G.

 Nucleotide sequence and intron structure of the apocytochrome b gene of

Neurospora crassa mitochondria.

EMBO J. 1983;2(8):1235-42.

68: Simeone A, de Falco A, Macino G, Boncinelli E.

 Sequence organization of the ribosomal spacer of D.melanogaster.

Nucleic Acids Res. 1982 Dec 20;10(24):8263-72.

69: Bonitz SG, Coruzzi G, Thalenfeld BE, Tzagoloff A, Macino G.

 Assembly of the mitochondrial membrane system. Structure and nucleotide sequence

of the gene coding for subunit 1 of yeast cytochrme oxidase.

J Biol Chem. 1980 Dec 25;255(24):11927-41.

70: Bonitz SG, Coruzzi G, Thalenfeld BE, Tzagoloff A, Macino G.

 Assembly of the mitochondrial membrane system. Physical map of the Oxi3 locus of

yeast mitochondrial DNA.

J Biol Chem. 1980 Dec 25;255(24):11922-6.

71: Macino G, Scazzocchio C, Waring RB, Berks MM, Davies RW.

 Conservation and rearrangement of mitochondrial structural gene sequences.

Nature. 1980 Nov 27;288(5789):404-6.

72: Macino G.

 Mapping of mitochondrial structural genes in Neurospora crassa.

J Biol Chem. 1980 Nov 25;255(22):10563-5.

73: Bonitz SG, Berlani R, Coruzzi G, Li M, Macino G, Nobrega FG, Nobrega MP,

Thalenfeld BE, Tzagoloff A.

 Codon recognition rules in yeast mitochondria.

Proc Natl Acad Sci U S A. 1980 Jun;77(6):3167-70.

74: Macino G, Tzagoloff A.

 Assembly of the mitochondrial membrane system: sequence analysis of a yeast

mitochondrial ATPase gene containing the oli-2 and oli-4 loci.

Cell. 1980 Jun;20(2):507-17.

75: Berlani RE, Pentella C, Macino G, Tzagoloff A.

 Assembly of the mitochondrial membrane system: isolation of mitochondrial

transfer ribonucleic acid mutants and characterization of transfer ribonucleic

acid genes of Saccharomyces cerevisiae.

J Bacteriol. 1980 Mar;141(3):1086-97.

76: Macino G, Coruzzi G, Nobrega FG, Li M, Tzagoloff A.

 Use of the UGA terminator as a tryptophan codon in yeast mitochondria.

Proc Natl Acad Sci U S A. 1979 Aug;76(8):3784-5.

77: Macino G, Tzagoloff A.

 Assembly of the mitochondrial membrane system. The DNA sequence of a

mitochondrial ATPase gene in Saccharomyces cerevisiae.

J Biol Chem. 1979 Jun 10;254(11):4617-23.

78: Macino G, Tzagoloff A.

 Assembly of the mitochondrial membrane system: two separate genes coding for

threonyl-tRNA in the mitochondrial DNA of Saccharomyces cerevisiae.

Mol Gen Genet. 1979 Jan 31;169(2):183-8.

79: Tzagoloff A, Macino G, Sebald W.

 Mitochondrial genes and translation products.

Annu Rev Biochem. 1979;48:419-41. Review. No abstract available.

80: Macino G, Tzagoloff A.

 Assembly of the mitochondrial membrane system: partial sequence of a

mitochondrial ATPase gene in Saccharomyces cerevisiae.

Proc Natl Acad Sci U S A. 1979 Jan;76(1):131-5.

81: Trembath MK, Macino G, Tzagoloff A.

 The mapping of mutations in tRNA and cytochrome oxidase genes located in the

cap-par segment of the mitochondrial genome of S. cerevisiae.

Mol Gen Genet. 1977 Dec 14;158(1):35-45. No abstract available.

82: Baldacci G, Carnevali F, Frontali L, Leoni L, Macino G, Palleschi C.

 Heterogeneity of mitochondrial DNA from Saccharomyces cerevisiae and genetic

information for tRNA.

Nucleic Acids Res. 1975 Oct;2(10):1777-86.

83: Carnevali F, Falcone C, Frontali L, Leoni L, Macino G, Palleschi C.

 Informational content of mitochondrial DNA from a "low density" petite mutant of

yeast.

Biochem Biophys Res Commun. 1973 Apr 2;51(3):651-8. No abstract available.

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